PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0515s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 393aa    MW: 44192.4 Da    PI: 4.586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0515s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.2e-36501412102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye++ed++++e++sws+  nsfvv+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k
  Kaladp0515s0230.1.p  50 FLTKTYEMVEDPATDEVVSWSRARNSFVVWDSNKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDQ---------WEFANEGFLGGQK 130
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+++
  Kaladp0515s0230.1.p 131 HLLKTIRRRRH 141
                          ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3446139IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3846139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6046139IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3150139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-195073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-19101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEDAKTMIQE EEVVVIKSTT GMASAASSTT TSSVSPRPVE GLHDLGPPPF LTKTYEMVED  60
PATDEVVSWS RARNSFVVWD SNKFSTTLLP RYFKHSNFSS FIRQLNTYGF RKVDPDQWEF  120
ANEGFLGGQK HLLKTIRRRR HTAQNVQQQG GSSVCVEVGQ YGLEGELERL KRDRSVLMTE  180
VLRLKQQQHE SREYIVAMQN RLRGTERKQQ QMMGFLAKAF NNPTFIQQFK LETAERKALD  240
GANIKRKRRL TASTSQEILN KQIDILDVLE NSAGGGQGQE DQIDLINMES EIETLFAAGL  300
ESESSNDVKL PRKTESMAKA GGSNLDSVNE MLWDELLSDD VAVGGEDDEQ LFLEDIPDID  360
VPVEELGDAS PSDWSEDLKD LVEQMNYLKS KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-254813927129Heat shock factor protein 1
5d5v_B8e-254813927129Heat shock factor protein 1
5d5v_D8e-254813927129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077263.11e-158PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotO809821e-128HSFA2_ARATH; Heat stress transcription factor A-2
SwissprotP411521e-128HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A067KQI11e-160A0A067KQI1_JATCU; Uncharacterized protein
STRINGVIT_04s0008g01110.t011e-151(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-129heat shock transcription factor A2